NGS data analysis tools
From Personalgenomicsinstitute.org
The new breathtaking technology, NGS, can be used in several fields and several analysis tools support the data analysis were developed.
Human disease or somewhat important phenotype related studies use the technology, and they can be summarized at DNA level, RNA level, and epigenetic level.
1. DNA level
- Whole genome re-sequencing
- Exome sequenciing
- Target region sequencing
2. RNA level
- Transcriptome sequencing
- DGE profiling
- Small RNA sequencing
3. Epigenetic level
Now let's see which package or tools are available in each level
DNA level
Whole genome re-sequencing
1. Genomatix Mining Station - The Next Generation in Mapping & Mining Technology ==> Send request e-mail.
2. GATK: Genome Analysis Toolkit
4. Genious Pro: Weak support for NGS data
6. Partek Genomics Suite by Partek
7. PaCGeE,Parallel Computational Genomics Engine, by geschickten
Analysis service
1. Synamatix in Malaysia propose a NGS data analysis service from $4000 US, mapping, indel, SNP
- Exome sequenciing
- Target region sequencing
2. RNA level
- Transcriptome sequencing
- DGE profiling
- Small RNA sequencing
3. Epigenetic level
